From cff4b6a4d204931b81a618b7bd5255a50eec4c36 Mon Sep 17 00:00:00 2001
From: "Michael Pilosov, PhD" <consistentbayes@gmail.com>
Date: Fri, 23 Feb 2024 17:17:05 +0000
Subject: [PATCH] umap center radius!!!! FML

---
 makefile                  | 2 +-
 scripts/sortcolor.py      | 4 ++--
 scripts/vips_composite.py | 2 +-
 3 files changed, 4 insertions(+), 4 deletions(-)

diff --git a/makefile b/makefile
index 854eeea..8acc8c7 100644
--- a/makefile
+++ b/makefile
@@ -59,7 +59,7 @@ sort_umap:
 	python scripts/sortcolor.py -s umap --dpi 300 --seed 21
 
 parallel_umap:
-	parallel -j 12 python scripts/sortcolor.py -s umap --dpi 300 --seed ::: $$(seq 1 100)
+	parallel -j 4 python scripts/sortcolor.py -s umap --dpi 300 --seed ::: $$(seq 1 100)
 
 parallel_check:
 	parallel -j 4 python check.py -v ::: $$(seq 0 99)
diff --git a/scripts/sortcolor.py b/scripts/sortcolor.py
index 9029acd..5aa4085 100644
--- a/scripts/sortcolor.py
+++ b/scripts/sortcolor.py
@@ -15,7 +15,7 @@ rgb_values = [mcolors.to_rgb(mcolors.XKCD_COLORS[color]) for color in colors]
 parser = argparse.ArgumentParser()
 parser.add_argument("-s", "--sort-by", type=str, default="hsv", help="kind of sorting")
 parser.add_argument("--seed", type=int, default=21, help="seed for UMAP")
-parser.add_argument("--dpi", type=int, default=100, help="dpi for saving")
+parser.add_argument("--dpi", type=int, default=300, help="dpi for saving")
 parser.add_argument("--size", type=float, default=6.0, help="size of figure")
 parser.add_argument(
     "--fontsize",
@@ -24,7 +24,7 @@ parser.add_argument(
     help="fontsize of annotation (default: 0 = None)",
 )
 parser.add_argument(
-    "--radius", type=float, default=1 / 3, help="inner radius of circle"
+    "--radius", type=float, default=1 / 2, help="inner radius of circle"
 )
 args = parser.parse_args()
 KIND = args.sort_by
diff --git a/scripts/vips_composite.py b/scripts/vips_composite.py
index 71e8963..b0b8662 100644
--- a/scripts/vips_composite.py
+++ b/scripts/vips_composite.py
@@ -62,7 +62,7 @@ def create_grid_composite(
 if __name__ == "__main__":
     # Example usage
     # experiment = "umap"
-    experiment = "supervised"
+    experiment = "unsupervised-anchors"
     # directory = "/teamspace/studios/this_studio/out_sortcolors/{experiment}/"  # Change to your directory path
     directory = f"/teamspace/studios/this_studio/colors/colors-refactor-{experiment}/"  # Change to your directory path
     k = 10